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Abstract
DNA barcoding is widely used for specie cataloging for unambiguous identification and conservation. In the present study, baseline information on the DNA barcoding of mitochondrial CO1 gene of some randomly caught West African birds were provided with five newly reported sequences for Tringa sp, Streptopelia decipens, Francolinus bicalcaratus, Tyto alba and Francolinus squamatus. Species identifications were made by comparing unknown CO1sequences against the DNA barcodes of known species through distance-based tree construction and alignment searching. The newly generated sequences are deposited in GenBank under accession numbers JX160000 - JX160017 and JX220905. Current study may contribute towards the development of a reference DNA barcoding database of West African birds.
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References
- Bates JM, Bowie RCK, Willard DE, Voelker G and Kahindo C. 2004. A need for continued collecting of avian voucher specimens in Africa: Why blood is not enough. Ostr. 75:187–191.
- Dawnay N, Ogden R, Mcewing R, Carvalho GR, Thorpe RS. 2007. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci. Int..173: 1-6.
- Echi PC, Ezenwaji HMG 2010. The Parasites Fauna of Characids’ (Osteichthyes: Characidae) Anambra River, Nigeria. Afr J of Ecol. 48(1): 1- 4
- Galtier N, Nabholz B, GLE´ MIN S, HURST GDD. 2009. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 18: 4541–4550
- Hebert PD, Penton EH, Burns JM, Janzen DH 2004. Ten species in one: DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. Proc of the Nat. Acad of Sci. U S A.
- Hajibabaei M, Singer GAC, Hebert PDN, Hickey DA 2007. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends ?n Gen. 23: 167–172.
- Hebert PDN, Cywinska A, Ball SL, Dewaard JR 2003a. Biological identifications through DNA barcodes. Proc of The Roy Soc B: Biol Sci, 270, 313–321.
- Hebert PDN, Ratnasingham S, Dewaard JR 2003b. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc of The Roy Soc B: Biol Sci. 270, 96–99.
- Hye SY, Jae-Yong E, Jong SK, Young-Jun K, Mi-Sook M, Woon KP, Hang L, Chang-Bae K. 2006. DNA Barcoding Korean Birds. Mol. Cells, 22(3): 323-327
- IUCN 2012 IUCN Red List of Threatened Species. Version 2012.1. . (Accessed 14 July 2012).
- Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN 2007. Universal primer cocktails for fish DNA barcoding. Mol. Ecol. 7: 544–548.
- Keith S, Fry CH, Urban EK. 1993. The Birds of Africa. Vol II Academic Press, London, pp 1 – 57
- Kerr KCR, Stoeckle MY, Dove C, Weigt LA, Francis CM. 2007. Comprehensive DNA barcode coverage of North American birds. Mol Ecol 7: 535–543.
- Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16(2):111-20.
- Meyer CP, Paulay G 2005. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 3: 2229–2238.
- Onyenekwe PC. 1988. Biochemical studies on the meat quality and digestive enzymes of Double-spurred Francolin Francolinus bicalcaratus. M.Sc Thesis, Ahmadu Bello University , Zaria, Nigeria, pp 106
- Roe AD, Sperling FAH 2007. Patterns of evolution of mitochondrial ytochrome c oxidase I and II DNA and implications for DNA barcoding. Mol. Phylo and Evol. 44,325–345.
- Savolainen, V Cowan, R.S., Vogler, A.P., Roderick, G.K 2005. Towards writing the encyclopedia of life: an introduction to DNA barcoding. Phil Trans of the Roy Soc of Lond. B Bio Sci. 360: 1805-1811.
- Serle W, Morel GJ, Hartwig W 1977. Birds of West Africa. Collins Field guide. Harper Collins Publishers, London.
- Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol and Evol. 28:2731-279.
References
Bates JM, Bowie RCK, Willard DE, Voelker G and Kahindo C. 2004. A need for continued collecting of avian voucher specimens in Africa: Why blood is not enough. Ostr. 75:187–191.
Dawnay N, Ogden R, Mcewing R, Carvalho GR, Thorpe RS. 2007. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci. Int..173: 1-6.
Echi PC, Ezenwaji HMG 2010. The Parasites Fauna of Characids’ (Osteichthyes: Characidae) Anambra River, Nigeria. Afr J of Ecol. 48(1): 1- 4
Galtier N, Nabholz B, GLE´ MIN S, HURST GDD. 2009. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 18: 4541–4550
Hebert PD, Penton EH, Burns JM, Janzen DH 2004. Ten species in one: DNA barcoding reveals cryptic species in the Neotropical skipper butterfly Astraptes fulgerator. Proc of the Nat. Acad of Sci. U S A.
Hajibabaei M, Singer GAC, Hebert PDN, Hickey DA 2007. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends ?n Gen. 23: 167–172.
Hebert PDN, Cywinska A, Ball SL, Dewaard JR 2003a. Biological identifications through DNA barcodes. Proc of The Roy Soc B: Biol Sci, 270, 313–321.
Hebert PDN, Ratnasingham S, Dewaard JR 2003b. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc of The Roy Soc B: Biol Sci. 270, 96–99.
Hye SY, Jae-Yong E, Jong SK, Young-Jun K, Mi-Sook M, Woon KP, Hang L, Chang-Bae K. 2006. DNA Barcoding Korean Birds. Mol. Cells, 22(3): 323-327
IUCN 2012 IUCN Red List of Threatened Species. Version 2012.1. . (Accessed 14 July 2012).
Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN 2007. Universal primer cocktails for fish DNA barcoding. Mol. Ecol. 7: 544–548.
Keith S, Fry CH, Urban EK. 1993. The Birds of Africa. Vol II Academic Press, London, pp 1 – 57
Kerr KCR, Stoeckle MY, Dove C, Weigt LA, Francis CM. 2007. Comprehensive DNA barcode coverage of North American birds. Mol Ecol 7: 535–543.
Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16(2):111-20.
Meyer CP, Paulay G 2005. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 3: 2229–2238.
Onyenekwe PC. 1988. Biochemical studies on the meat quality and digestive enzymes of Double-spurred Francolin Francolinus bicalcaratus. M.Sc Thesis, Ahmadu Bello University , Zaria, Nigeria, pp 106
Roe AD, Sperling FAH 2007. Patterns of evolution of mitochondrial ytochrome c oxidase I and II DNA and implications for DNA barcoding. Mol. Phylo and Evol. 44,325–345.
Savolainen, V Cowan, R.S., Vogler, A.P., Roderick, G.K 2005. Towards writing the encyclopedia of life: an introduction to DNA barcoding. Phil Trans of the Roy Soc of Lond. B Bio Sci. 360: 1805-1811.
Serle W, Morel GJ, Hartwig W 1977. Birds of West Africa. Collins Field guide. Harper Collins Publishers, London.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol and Evol. 28:2731-279.